PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03579.1.g00020.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 232aa    MW: 25408.3 Da    PI: 5.4056
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03579.1.g00020.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.7e-1676125355
                           AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   + GVr ++ +g+++AeIrd    + k +r++lg+f+t+e Aa a+++a+ + +g
  Zpz_sc03579.1.g00020.1.sm.mk  76 FIGVRTRP-WGKFAAEIRDsT--R-KGARVWLGTFDTPEAAALAYDQAAFSARG 125
                                   67***999.**********32..2.24***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.3E-3275139IPR001471AP2/ERF domain
PROSITE profilePS5103221.15375133IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2176135IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-2876135IPR001471AP2/ERF domain
CDDcd000181.11E-1776135No hitNo description
PRINTSPR003674.1E-87687IPR001471AP2/ERF domain
PfamPF008476.6E-1277125IPR001471AP2/ERF domain
PRINTSPR003674.1E-899115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MATTDGDDQF RRQLDALINF LDSEDSSDSF SSHSYANSSE AEMELESIGH ETHDIVQPCE  60
EASSTIENKT KPPQPFIGVR TRPWGKFAAE IRDSTRKGAR VWLGTFDTPE AAALAYDQAA  120
FSARGASAVL NFPESLRPLA LSDATGGSPV LALKRRHSKR TRRSKLSPNS VNVLRPQRRR  180
PRQCSGGKGN ITAVVVAQQL ETPACPFGAV ELDDLGADYL DELLRLSSEL EF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-2376133663ATERF1
2gcc_A3e-2376133663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276831e-57KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979115.12e-46PREDICTED: ethylene-responsive transcription factor ERF094-like
TrEMBLK4JRR91e-45K4JRR9_MAIZE; AP2-EREBP-type transcription factor (Fragment)
TrEMBLB4FAN61e-45B4FAN6_MAIZE; Uncharacterized protein
TrEMBLW5DYP44e-45W5DYP4_WHEAT; Uncharacterized protein
TrEMBLM7ZJD65e-45M7ZJD6_TRIUA; Ethylene-responsive transcription factor 1B
STRINGGRMZM2G123119_P013e-45(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-31ethylene response factor 1